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disk-fastqfastq wrapper persisted queue on disk to save some memory
- biotech-js
Package developed at A&A Biotechnology for reading all kinds of biotechnology related files
- bioinformatics-parser
.fasta and .fastq parsers
- @tomek7667/tmk-biotech
Used for reading fasta and fastq files and structuring as valid javascript objects. The package provides also some useful utility functions like complementarify used for getting complementary sequence, or sanitizeGenome for sanitizing user input.
- bionode-fastq
Streamable FASTQ parser
- fasta-tools
Tools for working with FASTA/FASTQ files (Bioinformatics).
- fastqparser
A simple fastq stream parser
- samfilter
These two tools allow the counting of alignment flags (https://broadinstitute.github.io/picard/explain-flags.html) in a SAM formated file and the extraction of reads for selected flags.